Variant report

Variant	rs1783459
Chromosome Location	chr11:56654666-56654667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56646465..56649384-chr11:56653182..56655132,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11228836	0.80[ASN][1000 genomes]
rs11603620	0.80[ASN][1000 genomes]
rs12416998	0.80[ASN][1000 genomes]
rs12419314	0.99[ASN][1000 genomes]
rs1613887	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1632332	0.96[ASN][1000 genomes]
rs17640838	0.80[ASN][1000 genomes]
rs17640885	0.83[ASN][1000 genomes]
rs1783444	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1783445	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1783446	0.99[ASN][1000 genomes]
rs1783447	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1783450	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1783451	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1783465	0.99[ASN][1000 genomes]
rs1792494	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1792495	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1792496	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1792498	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1792499	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1792500	0.96[ASN][1000 genomes]
rs1892787	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1938751	0.99[ASN][1000 genomes]
rs1938753	0.80[ASN][1000 genomes]
rs1938759	0.83[ASN][1000 genomes]
rs1938760	0.83[ASN][1000 genomes]
rs2226850	0.99[ASN][1000 genomes]
rs2226851	0.99[ASN][1000 genomes]
rs2374	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4939095	0.99[ASN][1000 genomes]
rs4939097	0.99[ASN][1000 genomes]
rs523098	0.99[ASN][1000 genomes]
rs551339	0.98[AFR][1000 genomes]
rs56210588	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs677946	0.95[AFR][1000 genomes]
rs68039795	0.82[ASN][1000 genomes]
rs684115	0.96[AFR][1000 genomes]
rs7111113	0.80[ASN][1000 genomes]
rs7118645	0.83[ASN][1000 genomes]
rs7119402	0.80[ASN][1000 genomes]
rs731744	0.80[ASN][1000 genomes]
rs737368	0.83[ASN][1000 genomes]
rs7930832	0.99[ASN][1000 genomes]
rs7940288	0.80[ASN][1000 genomes]
rs7943283	0.80[ASN][1000 genomes]
rs7947879	0.83[ASN][1000 genomes]
rs947805	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56651200-56654800	Enhancers	Fetal Intestine Large	intestine
2	chr11:56652000-56654800	Enhancers	Fetal Intestine Small	intestine
3	chr11:56652000-56654800	Enhancers	Stomach Mucosa	stomach
4	chr11:56652200-56654800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:56652200-56655000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:56653200-56656800	Weak transcription	NHEK	skin
7	chr11:56653200-56657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:56653200-56657400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:56653800-56655400	Weak transcription	Gastric	stomach
10	chr11:56654000-56655600	Flanking Active TSS	A549	lung
11	chr11:56654600-56657200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links