Variant report

Variant	rs17836204
Chromosome Location	chr14:69843780-69843781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69841947..69843933-chr14:69852342..69854266,2	MCF-7	breast:
2	chr13:42149633..42150133-chr14:69842933..69843862,2	MCF-7	breast:
3	chr14:69834457..69836260-chr14:69841920..69844753,2	K562	blood:
4	chr14:69824235..69826782-chr14:69843380..69845607,3	MCF-7	breast:
5	chr14:69833439..69838748-chr14:69841652..69843857,5	K562	blood:
6	chr14:69842726..69844478-chr14:69844525..69846772,2	MCF-7	breast:
7	chr14:69841672..69843783-chr14:69865247..69866834,2	MCF-7	breast:
8	chr14:69841304..69844140-chr14:69845246..69848193,3	K562	blood:
9	chr14:69843007..69844959-chr14:69863528..69866274,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1275672	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232057	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232058	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296721	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7140358	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145903	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152886	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158020	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7276	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007612	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013221	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014284	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015357	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016589	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021143	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
2	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:69833200-69845600	Weak transcription	Fetal Stomach	stomach
6	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
7	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
8	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
9	chr14:69836800-69851600	Weak transcription	Gastric	stomach
10	chr14:69837000-69845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:69837400-69851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:69838000-69846200	Weak transcription	Esophagus	oesophagus
14	chr14:69839200-69852200	Weak transcription	Aorta	Aorta
15	chr14:69839800-69851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:69840000-69845000	Weak transcription	K562	blood
17	chr14:69840800-69851600	Weak transcription	Colonic Mucosa	Colon
18	chr14:69840800-69852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:69841000-69843800	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:69841000-69844200	Strong transcription	Fetal Brain Female	brain
21	chr14:69841000-69845200	Strong transcription	Liver	Liver
22	chr14:69841000-69863400	Strong transcription	A549	lung
23	chr14:69841200-69843800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:69841200-69844400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:69841200-69844600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:69841400-69843800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:69841400-69843800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:69841400-69844800	Strong transcription	Primary B cells from cord blood	blood
30	chr14:69841400-69847800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:69841600-69843800	Strong transcription	Fetal Lung	lung
33	chr14:69841600-69843800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr14:69841600-69844000	Strong transcription	Left Ventricle	heart
35	chr14:69841600-69844000	Strong transcription	NH-A	brain
36	chr14:69841600-69844200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:69841600-69848600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:69841600-69858000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:69841600-69863400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:69841800-69843800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr14:69841800-69844400	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr14:69841800-69848400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr14:69841800-69849800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr14:69841800-69857800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr14:69841800-69863000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:69841800-69863800	Weak transcription	Stomach Mucosa	stomach
47	chr14:69842000-69843800	Strong transcription	HUVEC	blood vessel
48	chr14:69842000-69844000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:69842000-69844000	Strong transcription	Osteobl	bone
50	chr14:69842000-69851400	Strong transcription	Primary T helper cells fromperipheralblood	blood

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