Variant report

Variant	rs17841017
Chromosome Location	chr14:37571354-37571355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37192459..37195312-chr14:37570603..37573601,2	K562	blood:

Variant related genes	Relation type
ENSG00000183032	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1012199	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10129152	0.98[ASN][1000 genomes]
rs10132328	0.81[ASN][1000 genomes]
rs10133673	1.00[EUR][1000 genomes]
rs10142021	1.00[EUR][1000 genomes]
rs10151092	0.98[ASN][1000 genomes]
rs10459480	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12050169	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12050463	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12889634	0.81[ASN][1000 genomes]
rs17091939	0.80[ASN][1000 genomes]
rs17106189	1.00[EUR][1000 genomes]
rs17106275	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17106290	0.81[ASN][1000 genomes]
rs17106291	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17106333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17106393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17106396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17106404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17106433	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17106509	0.80[ASN][1000 genomes]
rs1884220	0.81[ASN][1000 genomes]
rs1884221	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1884777	0.81[ASN][1000 genomes]
rs1950367	0.82[ASN][1000 genomes]
rs1950374	0.98[ASN][1000 genomes]
rs1950375	0.98[ASN][1000 genomes]
rs1950376	0.81[ASN][1000 genomes]
rs1955760	0.81[ASN][1000 genomes]
rs1955761	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1955762	0.99[ASN][1000 genomes]
rs1955763	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1971451	0.98[ASN][1000 genomes]
rs1998121	1.00[EUR][1000 genomes]
rs2038310	0.91[ASN][1000 genomes]
rs2057171	0.81[ASN][1000 genomes]
rs2078246	0.98[ASN][1000 genomes]
rs2415388	0.98[ASN][1000 genomes]
rs61293305	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6571789	0.94[ASN][1000 genomes]
rs7151524	0.97[ASN][1000 genomes]
rs7160129	0.98[ASN][1000 genomes]
rs74045463	1.00[EUR][1000 genomes]
rs74045478	0.81[ASN][1000 genomes]
rs8008478	0.81[ASN][1000 genomes]
rs8014186	0.83[ASN][1000 genomes]
rs8020153	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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