Variant report

Variant	rs17847726
Chromosome Location	chr11:17121648-17121649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17097195..17099723-chr11:17118234..17121858,4	K562	blood:
2	chr11:17099951..17102029-chr11:17121087..17123839,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201403	Chromatin interaction
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11825018	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12288376	0.83[ASN][1000 genomes]
rs17847718	1.00[ASN][1000 genomes]
rs61762002	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61763074	1.00[ASN][1000 genomes]
rs7925960	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
2	chr11:17100600-17124200	Weak transcription	Fetal Brain Male	brain
3	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:17108200-17141400	Strong transcription	Liver	Liver
9	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:17108800-17126800	Strong transcription	Osteobl	bone
12	chr11:17109000-17121800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:17109400-17128600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:17109400-17132600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:17109600-17127600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:17110000-17122200	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr11:17110000-17128200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:17110000-17128400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:17110200-17132800	Strong transcription	Fetal Intestine Large	intestine
24	chr11:17110200-17136400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr11:17111000-17125400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:17111600-17124400	Strong transcription	Fetal Intestine Small	intestine
27	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:17113200-17125600	Weak transcription	Small Intestine	intestine
30	chr11:17113600-17124000	Weak transcription	K562	blood
31	chr11:17113600-17130000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:17113800-17124000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:17114000-17124200	Strong transcription	HUVEC	blood vessel
34	chr11:17114200-17124000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:17115800-17122600	Weak transcription	Brain Substantia Nigra	brain
36	chr11:17115800-17154400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:17116600-17124000	Weak transcription	Fetal Lung	lung
38	chr11:17116800-17134800	Weak transcription	NHLF	lung
39	chr11:17116800-17149800	Weak transcription	A549	lung
40	chr11:17117200-17121800	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:17117800-17122600	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:17117800-17126600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:17117800-17126800	Strong transcription	HepG2	liver
44	chr11:17117800-17147000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:17117800-17151800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:17118000-17122800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr11:17118200-17121800	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr11:17118200-17125800	Strong transcription	NHEK	skin
49	chr11:17118200-17127400	Strong transcription	Primary T cells from cord blood	blood
50	chr11:17118200-17129000	Strong transcription	Primary T helper cells PMA-I stimulated	--

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