Variant report

Variant	rs17847728
Chromosome Location	chr11:17116027-17116028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17098682..17100639-chr11:17114655..17116315,2	K562	blood:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10741723	0.89[ASN][1000 genomes]
rs10832730	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11024142	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11024145	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11024146	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11024147	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11024150	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024152	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11024153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024185	0.87[ASN][1000 genomes]
rs11024186	0.87[ASN][1000 genomes]
rs11024190	0.86[ASN][1000 genomes]
rs11529145	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11529605	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11529606	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11529608	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12225195	0.88[ASN][1000 genomes]
rs12576590	0.89[ASN][1000 genomes]
rs2302511	0.89[ASN][1000 genomes]
rs4757499	0.88[ASN][1000 genomes]
rs6416174	0.89[ASN][1000 genomes]
rs6486349	0.91[ASN][1000 genomes]
rs6486350	0.89[ASN][1000 genomes]
rs6486353	0.89[ASN][1000 genomes]
rs67771121	0.86[ASN][1000 genomes]
rs7113011	0.87[ASN][1000 genomes]
rs7122571	0.85[ASN][1000 genomes]
rs7123825	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127204	0.93[ASN][1000 genomes]
rs72632985	0.81[ASN][1000 genomes]
rs72632986	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72632987	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72632988	0.87[ASN][1000 genomes]
rs72632989	0.86[ASN][1000 genomes]
rs72632990	0.86[ASN][1000 genomes]
rs7929047	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7934596	0.87[ASN][1000 genomes]
rs7941165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945756	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17119200	Weak transcription	Esophagus	oesophagus
2	chr11:17100400-17119200	Weak transcription	Pancreas	Pancrea
3	chr11:17100400-17119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
5	chr11:17100600-17124200	Weak transcription	Fetal Brain Male	brain
6	chr11:17100800-17119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:17108200-17116800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:17108200-17141400	Strong transcription	Liver	Liver
14	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:17108400-17117000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:17108800-17126800	Strong transcription	Osteobl	bone
18	chr11:17109000-17116400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:17109000-17116800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:17109000-17117000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:17109000-17117000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:17109000-17121600	Strong transcription	Adipose Nuclei	Adipose
23	chr11:17109000-17121800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:17109200-17116800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:17109400-17116800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:17109400-17128600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:17109400-17132600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:17109600-17116800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:17109600-17116800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:17109600-17127600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:17109800-17116800	Strong transcription	Placenta	Placenta
35	chr11:17109800-17117000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:17109800-17121600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:17110000-17116800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr11:17110000-17116800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:17110000-17116800	Strong transcription	Ovary	ovary
41	chr11:17110000-17116800	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr11:17110000-17118000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:17110000-17121600	Strong transcription	Fetal Muscle Leg	muscle
44	chr11:17110000-17122200	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr11:17110000-17128200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:17110000-17128400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:17110200-17116600	Strong transcription	Primary T cells from cord blood	blood
48	chr11:17110200-17116600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr11:17110200-17116600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr11:17110200-17116800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links