Variant report

Variant	rs17861434
Chromosome Location	chr7:126916522-126916523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10228722	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10258076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563399	1.00[CEU][hapmap]
rs11563675	0.91[CEU][hapmap]
rs12706770	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12706772	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13222063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1361936	1.00[CEU][hapmap]
rs1592376	1.00[JPT][hapmap]
rs17863255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17863256	1.00[CEU][hapmap]
rs17863258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs17863264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17866154	1.00[JPT][hapmap]
rs7797094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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