Variant report
| Variant | rs17862257 |
|---|---|
| Chromosome Location | chr7:126641058-126641059 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126085913-126088095..7:126639464-126642359 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs1003038 | 1.00[CHB][hapmap] |
| rs10954140 | 1.00[CHB][hapmap] |
| rs11563410 | 1.00[CHB][hapmap] |
| rs11563512 | 0.83[CEU][hapmap];0.95[TSI][hapmap] |
| rs11767521 | 1.00[CHB][hapmap] |
| rs17684388 | 1.00[JPT][hapmap] |
| rs1894730 | 1.00[JPT][hapmap] |
| rs2051681 | 1.00[JPT][hapmap] |
| rs28951079 | 1.00[JPT][hapmap] |
| rs28951991 | 1.00[JPT][hapmap] |
| rs34682508 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv889188 | chr7:126620555-126646353 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17862257 | RBM28 | cis | parietal | SCAN |
| rs17862257 | LOC407835 | cis | cerebellum | SCAN |
| rs17862257 | FSCN3 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
