Variant report
Variant | rs17862258 |
---|---|
Chromosome Location | chr7:126641643-126641644 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | 7:126085913-126088095..7:126639464-126642359 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000179603 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10260443 | 0.80[CHB][hapmap];0.93[LWK][hapmap];0.90[YRI][hapmap] |
rs12706757 | 0.90[YRI][hapmap];0.86[AFR][1000 genomes] |
rs17862254 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs17862256 | 0.90[YRI][hapmap];0.85[AFR][1000 genomes] |
rs17863174 | 0.90[YRI][hapmap] |
rs17863175 | 0.80[CHB][hapmap];0.82[CHD][hapmap] |
rs2188186 | 0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap] |
rs2213968 | 0.80[CHB][hapmap];0.90[YRI][hapmap] |
rs2402848 | 0.95[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap] |
rs4728060 | 0.81[CHB][hapmap];0.84[JPT][hapmap] |
rs6951546 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7796426 | 1.00[LWK][hapmap];0.89[MKK][hapmap];0.93[YRI][hapmap] |
rs929174 | 0.90[CHB][hapmap];0.82[CHD][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv889188 | chr7:126620555-126646353 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |