Variant report

Variant	rs17862270
Chromosome Location	chr7:126685555-126685556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126678600-126685844..7:127233104-127239235	H1-hESC	embryonic stem cell:	embryo
2	7:126085913-126088095..7:126678600-126685844	K562	blood:
3	7:126678600-126685844..7:127009457-127018926	H1-hESC	embryonic stem cell:	embryo
4	7:126678600-126685844..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction
ENSG00000179603	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10268335	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs10271115	0.87[CEU][hapmap]
rs10487464	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10487465	0.85[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10487466	0.85[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11563503	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs11563505	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs11563749	0.87[CEU][hapmap]
rs11563750	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11563755	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11563756	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11563757	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11563758	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11563759	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11563760	0.87[CEU][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11563761	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11563762	0.87[CEU][hapmap]
rs11563764	0.87[CEU][hapmap]
rs11563765	0.87[CEU][hapmap]
rs11563766	0.85[CEU][hapmap]
rs11563767	0.87[CEU][hapmap]
rs11563768	0.87[CEU][hapmap]
rs11563769	0.87[CEU][hapmap]
rs11563771	0.87[CEU][hapmap]
rs11563772	0.87[CEU][hapmap]
rs11563773	0.85[CEU][hapmap]
rs11563774	0.87[CEU][hapmap]
rs11563782	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11563787	0.87[CEU][hapmap]
rs11563788	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs12667596	0.87[CEU][hapmap]
rs12669516	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12670200	0.87[CEU][hapmap]
rs12670241	0.87[CEU][hapmap]
rs12670940	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs1419440	0.87[CEU][hapmap]
rs1419441	0.85[CEU][hapmap]
rs17644601	0.89[AMR][1000 genomes]
rs17862273	0.87[CEU][hapmap]
rs17862275	0.87[CEU][hapmap]
rs17862277	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863187	0.87[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17863198	0.87[CEU][hapmap]
rs17863199	0.85[CEU][hapmap]
rs17864094	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17864106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866413	0.87[CEU][hapmap]
rs17867742	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs17867745	0.87[CEU][hapmap]
rs17868694	0.87[CEU][hapmap]
rs17874838	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2237781	0.87[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2299526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2402849	0.87[CEU][hapmap]
rs3779538	0.85[CEU][hapmap]
rs3779539	0.82[CEU][hapmap]
rs3808129	0.87[CEU][hapmap]
rs3808130	0.87[CEU][hapmap]
rs62468871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62468872	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6467106	0.87[CEU][hapmap]
rs6467107	0.87[CEU][hapmap]
rs6467108	0.87[CEU][hapmap]
rs6467109	0.87[CEU][hapmap]
rs6958658	0.85[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6962580	0.87[CEU][hapmap]
rs7795745	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links