Variant report

Variant	rs17862310
Chromosome Location	chr7:126812075-126812076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17862293	0.85[ASN][1000 genomes]
rs17862309	0.82[CEU][hapmap];0.94[YRI][hapmap]
rs17863237	0.85[CEU][hapmap];0.95[YRI][hapmap]
rs17864142	0.85[CEU][hapmap]
rs17864153	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17864154	0.85[CEU][hapmap]
rs17864156	0.85[CEU][hapmap];0.95[YRI][hapmap]
rs17867764	0.81[ASN][1000 genomes]
rs17867775	0.82[CEU][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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