Variant report

Variant	rs17862314
Chromosome Location	chr7:126826601-126826602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10215483	0.88[JPT][hapmap]
rs10254810	0.88[JPT][hapmap]
rs11563283	1.00[CEU][hapmap]
rs11563486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563701	0.88[JPT][hapmap]
rs17867779	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2106184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126826600-126827800	Enhancers	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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