Variant report

Variant	rs17862373
Chromosome Location	chr7:127030914-127030915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:127028627..127034604-chr7:127290902..127294330,10	K562	blood:
2	chr7:126890989..126892929-chr7:127030143..127031828,2	K562	blood:
3	chr7:126891429..126894759-chr7:127030328..127033331,3	K562	blood:
4	chr7:124568199..124570049-chr7:127030538..127032262,2	K562	blood:
5	chr7:127029421..127032644-chr7:127225849..127230043,4	K562	blood:
6	chr7:127011403..127015656-chr7:127030018..127033626,5	MCF-7	breast:
7	chr7:127029920..127034279-chr7:127291168..127294285,4	MCF-7	breast:
8	chr7:126985549..126992875-chr7:127029251..127034121,12	K562	blood:
9	chr7:127029926..127034103-chr7:127290516..127296284,10	K562	blood:
10	7:127018926-127031401..7:127225864-127233104	GM12878	blood:
11	chr7:127030656..127034603-chr7:127225190..127230310,7	MCF-7	breast:
12	chr7:127030702..127032822-chr7:127225677..127228410,2	K562	blood:
13	chr7:126986612..126990415-chr7:127030676..127033732,5	MCF-7	breast:
14	chr7:127029710..127031425-chr7:127223737..127226440,2	MCF-7	breast:
15	chr7:126987100..126989492-chr7:127030062..127031935,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction
ENSG00000240790	Chromatin interaction
ENSG00000197157	Chromatin interaction
ENSG00000224897	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000128513	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000224138	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11563463	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11563627	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12056134	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1361943	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17867829	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17874842	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6956825	0.81[ASN][1000 genomes]
rs6973848	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs951809	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
3	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
4	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
5	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
8	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
9	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
10	chr7:127001600-127031400	Weak transcription	Gastric	stomach
11	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
13	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
15	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:127015000-127031000	Weak transcription	Brain Anterior Caudate	brain
17	chr7:127015000-127031200	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:127015000-127031200	Weak transcription	Thymus	Thymus
19	chr7:127015000-127031200	Weak transcription	HSMMtube	muscle
20	chr7:127015000-127031400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:127015000-127031400	Weak transcription	Fetal Kidney	kidney
22	chr7:127015000-127031400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:127015000-127031400	Weak transcription	Lung	lung
24	chr7:127015200-127031200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:127018200-127031200	Weak transcription	Brain Germinal Matrix	brain
26	chr7:127022200-127031200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:127023600-127031200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:127023600-127031200	Weak transcription	Stomach Mucosa	stomach
29	chr7:127023600-127031200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:127023600-127031400	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:127023800-127031000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:127023800-127031200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr7:127023800-127031600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:127024200-127031000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:127024600-127031200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:127024800-127031200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr7:127025200-127031200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr7:127027400-127031000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:127027600-127031000	Weak transcription	Colon Smooth Muscle	Colon
40	chr7:127027600-127031200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:127028000-127031200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr7:127028000-127031200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:127028000-127031400	Weak transcription	Left Ventricle	heart
44	chr7:127028000-127031400	Weak transcription	Ovary	ovary
45	chr7:127028200-127031000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr7:127028200-127031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:127028200-127031200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr7:127028200-127031200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr7:127028400-127031000	Strong transcription	HSMM	muscle
50	chr7:127028800-127031400	Weak transcription	Small Intestine	intestine

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