Variant report
Variant | rs17863182 |
---|---|
Chromosome Location | chr7:126664119-126664120 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | 7:126085913-126088095..7:126662926-126671620 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000179603 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10225020 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10242944 | 1.00[CEU][hapmap] |
rs11563409 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11563511 | 1.00[CEU][hapmap] |
rs11563735 | 1.00[CEU][hapmap] |
rs11563777 | 0.90[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11563780 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11563793 | 1.00[CEU][hapmap] |
rs17863188 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs17864102 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17867740 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs17867741 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7778604 | 0.90[CEU][hapmap];0.90[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
No data |