Variant report
| Variant | rs17863189 |
|---|---|
| Chromosome Location | chr7:126684995-126684996 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126678600-126685844..7:127233104-127239235 | H1-hESC | embryonic stem cell: | embryo |
| 2 | 7:126085913-126088095..7:126678600-126685844 | K562 | blood: | |
| 3 | 7:126678600-126685844..7:127009457-127018926 | H1-hESC | embryonic stem cell: | embryo |
| 4 | 7:126678600-126685844..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179562 | Chromatin interaction |
| ENSG00000048405 | Chromatin interaction |
| ENSG00000106328 | Chromatin interaction |
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10225883 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10252623 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1894731 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2237780 | 0.88[ASN][1000 genomes] |
| rs2283090 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2283091 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2283092 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2299525 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3808126 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3808127 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6467104 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6467105 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6942923 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6950012 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6978939 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6979287 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7778308 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
