Variant report
| Variant | rs17863242 |
|---|---|
| Chromosome Location | chr7:126851448-126851449 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10487472 | 0.82[CEU][hapmap];0.93[GIH][hapmap] |
| rs12334074 | 0.85[CEU][hapmap] |
| rs17862309 | 0.82[CEU][hapmap] |
| rs17862320 | 1.00[CEU][hapmap] |
| rs17862333 | 0.85[CEU][hapmap] |
| rs17863237 | 0.85[CEU][hapmap] |
| rs17864142 | 0.85[CEU][hapmap] |
| rs17864153 | 0.85[CEU][hapmap] |
| rs17864154 | 0.85[CEU][hapmap] |
| rs17864156 | 0.85[CEU][hapmap] |
| rs17864160 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17864165 | 0.85[CEU][hapmap] |
| rs17864170 | 0.85[CEU][hapmap] |
| rs17864185 | 0.82[CEU][hapmap] |
| rs17864189 | 0.82[CEU][hapmap] |
| rs17865066 | 0.85[CEU][hapmap] |
| rs17866153 | 0.85[CEU][hapmap] |
| rs17866314 | 0.82[CEU][hapmap];0.93[GIH][hapmap] |
| rs17866414 | 0.85[CEU][hapmap] |
| rs17866742 | 0.85[CEU][hapmap] |
| rs17866749 | 0.82[CEU][hapmap] |
| rs17867065 | 0.85[CEU][hapmap] |
| rs17867775 | 0.82[CEU][hapmap] |
| rs17867806 | 0.85[CEU][hapmap] |
| rs17867809 | 0.82[CEU][hapmap] |
| rs17869261 | 0.85[CEU][hapmap] |
| rs17869284 | 0.85[CEU][hapmap] |
| rs2299554 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap] |
| rs6957728 | 0.85[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv889190 | chr7:126841090-126856057 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv1819919 | chr7:126850298-126888714 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:126850000-126852000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
