Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126085913-126088095..7:126639464-126642359	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1003037	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1003038	0.90[YRI][hapmap]
rs10267279	1.00[CHB][hapmap]
rs10267858	1.00[CHB][hapmap]
rs10954140	0.90[YRI][hapmap]
rs1154326	1.00[JPT][hapmap]
rs1154333	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1155655	1.00[CHB][hapmap]
rs1155657	1.00[JPT][hapmap]
rs1204553	1.00[JPT][hapmap]
rs1204554	1.00[JPT][hapmap]
rs1204556	1.00[JPT][hapmap]
rs1204558	1.00[JPT][hapmap]
rs1204559	1.00[JPT][hapmap]
rs1204560	1.00[JPT][hapmap]
rs1204561	1.00[JPT][hapmap]
rs1204562	1.00[JPT][hapmap]
rs1204565	1.00[JPT][hapmap]
rs1204566	1.00[JPT][hapmap]
rs1204568	1.00[JPT][hapmap]
rs1204570	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1204572	1.00[JPT][hapmap]
rs1204574	1.00[JPT][hapmap]
rs1204582	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204585	1.00[JPT][hapmap]
rs1204589	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1204590	1.00[JPT][hapmap]
rs1204595	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1419457	1.00[JPT][hapmap]
rs1419463	1.00[JPT][hapmap]
rs1419466	1.00[JPT][hapmap]
rs17867124	0.90[YRI][hapmap]
rs2021162	1.00[JPT][hapmap]
rs2109740	1.00[JPT][hapmap]
rs2518948	1.00[JPT][hapmap]
rs2518956	1.00[JPT][hapmap]
rs2518959	1.00[JPT][hapmap]
rs2535928	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2535937	1.00[JPT][hapmap]
rs2896388	1.00[JPT][hapmap]
rs6946530	1.00[CHB][hapmap]
rs7777099	0.90[YRI][hapmap]
rs916614	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs994783	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889188	chr7:126620555-126646353	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Depression (quantitative trait)	20800221	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17864092	LMOD2	cis	cerebellum	SCAN
rs17864092	LOC407835	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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