Variant report

Variant	rs17864170
Chromosome Location	chr7:126887629-126887630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr7:126887574-126888044	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126884896..126891192-chr7:126891657..126895737,6	K562	blood:
2	chr7:126887307..126889755-chr7:127030651..127034460,3	MCF-7	breast:

Variant related genes	Relation type
GRM8	TF binding region
ENSG00000179603	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10234740	0.82[CHB][hapmap]
rs10487472	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12334074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17644601	0.82[CEU][hapmap]
rs17862293	0.82[CEU][hapmap]
rs17862320	0.82[CEU][hapmap]
rs17862333	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862345	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17863211	0.82[CEU][hapmap]
rs17863242	0.85[CEU][hapmap]
rs17863253	0.82[CHB][hapmap]
rs17863257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17864127	0.82[CEU][hapmap]
rs17864160	0.85[CEU][hapmap]
rs17864165	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864185	1.00[CEU][hapmap]
rs17864189	1.00[CEU][hapmap]
rs17865066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17865434	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17866153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs17866314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17866414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866742	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17866745	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17866749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867065	1.00[CEU][hapmap]
rs17867232	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17867322	0.82[CHB][hapmap]
rs17867759	0.82[CEU][hapmap]
rs17867764	0.82[CEU][hapmap]
rs17867770	0.82[CEU][hapmap]
rs17867806	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17867809	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17867821	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17869212	0.82[CEU][hapmap]
rs17869261	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17869284	1.00[CEU][hapmap]
rs17869543	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237793	0.82[CEU][hapmap]
rs2299554	1.00[CEU][hapmap]
rs62468892	0.86[EUR][1000 genomes]
rs62468898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468908	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6957728	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126886000-126890400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:126887600-126887800	Enhancers	Brain Hippocampus Middle	brain

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