Variant report

Variant	rs17864189
Chromosome Location	chr7:126963028-126963029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126959954..126961544-chr7:126962863..126965065,3	K562	blood:
2	7:126085913-126088095..7:126960843-126968648	GM12878	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10230771	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs10243337	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs10243876	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs10487472	1.00[CEU][hapmap]
rs10808228	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs10954150	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs12334074	1.00[CEU][hapmap]
rs12706789	1.00[JPT][hapmap]
rs12706790	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs17862333	1.00[CEU][hapmap]
rs17863242	0.82[CEU][hapmap]
rs17864160	0.82[CEU][hapmap]
rs17864165	1.00[CEU][hapmap]
rs17864170	1.00[CEU][hapmap]
rs17864185	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17865066	1.00[CEU][hapmap]
rs17865317	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17865434	1.00[CEU][hapmap]
rs17865997	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17866153	1.00[CEU][hapmap]
rs17866314	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17866414	1.00[CEU][hapmap]
rs17866742	1.00[CEU][hapmap]
rs17866749	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17866915	1.00[YRI][hapmap]
rs17867037	1.00[JPT][hapmap]
rs17867065	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17867806	1.00[CEU][hapmap]
rs17867809	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs17867832	0.80[CHB][hapmap]
rs17869261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17869284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1833067	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2299554	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs4731360	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs6957728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6961591	0.90[CHB][hapmap]
rs7808943	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs7809156	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs7809187	0.80[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv967497	chr7:126958676-126966982	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126961600-126963400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr7:126961600-126963600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr7:126961800-126963600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:126962000-126963200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr7:126962000-126963600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr7:126962600-126963200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:126962600-126963400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:126962800-126963400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:126963000-126963600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:126963000-126963800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:126963000-126964200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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