Variant report
| Variant | rs17864955 |
|---|---|
| Chromosome Location | chr7:126679364-126679365 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126678600-126685844..7:127233104-127239235 | H1-hESC | embryonic stem cell: | embryo |
| 2 | 7:126085913-126088095..7:126678600-126685844 | K562 | blood: | |
| 3 | 7:126678600-126685844..7:127009457-127018926 | H1-hESC | embryonic stem cell: | embryo |
| 4 | 7:126678600-126685844..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000106328 | Chromatin interaction |
| ENSG00000048405 | Chromatin interaction |
| ENSG00000179562 | Chromatin interaction |
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs17865085 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865135 | 1.00[YRI][hapmap] |
| rs17865260 | 1.00[AMR][1000 genomes] |
| rs17865396 | 1.00[AMR][1000 genomes] |
| rs17865397 | 1.00[YRI][hapmap] |
| rs17865859 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865986 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17866407 | 1.00[YRI][hapmap] |
| rs17866775 | 1.00[YRI][hapmap] |
| rs17866784 | 1.00[AMR][1000 genomes] |
| rs17866946 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17868673 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17869417 | 1.00[AMR][1000 genomes] |
| rs17869567 | 1.00[YRI][hapmap] |
| rs17869590 | 1.00[AMR][1000 genomes] |
| rs17869778 | 1.00[AMR][1000 genomes] |
| rs17875006 | 1.00[AMR][1000 genomes] |
| rs17875053 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3327508 | chr7:126678741-126681489 | Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3395612 | chr7:126678991-126681264 | Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:126676600-126682000 | Weak transcription | Liver | Liver |
