Variant report
| Variant | rs17865085 |
|---|---|
| Chromosome Location | chr7:126701477-126701478 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr7:126701344-126701544 | HepG2 | liver: | n/a | chr7:126701454-126701465 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MIR592 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs17864955 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865135 | 1.00[YRI][hapmap] |
| rs17865260 | 1.00[AMR][1000 genomes] |
| rs17865396 | 1.00[AMR][1000 genomes] |
| rs17865397 | 1.00[YRI][hapmap] |
| rs17865859 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865986 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17866407 | 1.00[YRI][hapmap] |
| rs17866775 | 1.00[YRI][hapmap] |
| rs17866784 | 1.00[AMR][1000 genomes] |
| rs17866946 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17868673 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17869417 | 1.00[AMR][1000 genomes] |
| rs17869567 | 1.00[YRI][hapmap] |
| rs17869590 | 1.00[AMR][1000 genomes] |
| rs17869778 | 1.00[AMR][1000 genomes] |
| rs17875006 | 1.00[AMR][1000 genomes] |
| rs17875053 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
