Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17865088	0.88[YRI][hapmap]
rs17865283	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865293	0.88[YRI][hapmap]
rs17865857	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865862	0.88[YRI][hapmap]
rs17866035	0.87[YRI][hapmap]
rs17866144	0.88[YRI][hapmap]
rs17866240	1.00[YRI][hapmap]
rs17866251	0.88[YRI][hapmap]
rs17866881	0.88[YRI][hapmap]
rs17866945	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866947	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867033	0.88[YRI][hapmap]
rs17867119	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867200	1.00[AMR][1000 genomes]
rs17867202	1.00[YRI][hapmap]
rs17867252	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869249	0.87[YRI][hapmap]
rs17869347	1.00[YRI][hapmap]
rs17875028	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126673800-126674600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr7:126674000-126674400	Enhancers	Liver	Liver
3	chr7:126674000-126676000	Enhancers	Fetal Kidney	kidney

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