Variant report
| Variant | rs17865293 |
|---|---|
| Chromosome Location | chr7:126718694-126718695 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126718359..126720333-chr7:126729809..126731677,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs17865088 | 1.00[YRI][hapmap] |
| rs17865221 | 0.88[YRI][hapmap] |
| rs17865283 | 0.88[YRI][hapmap] |
| rs17865313 | 0.89[YRI][hapmap] |
| rs17865511 | 0.89[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17865857 | 0.88[YRI][hapmap] |
| rs17865862 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs17866035 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs17866144 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs17866151 | 1.00[AFR][1000 genomes] |
| rs17866240 | 0.88[YRI][hapmap] |
| rs17866251 | 1.00[YRI][hapmap] |
| rs17866296 | 0.89[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17866779 | 0.85[AFR][1000 genomes] |
| rs17866881 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs17866945 | 0.88[YRI][hapmap] |
| rs17866947 | 0.88[YRI][hapmap] |
| rs17867033 | 1.00[YRI][hapmap] |
| rs17867096 | 0.89[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17867119 | 0.88[YRI][hapmap] |
| rs17867202 | 0.88[YRI][hapmap] |
| rs17867217 | 0.88[YRI][hapmap] |
| rs17867218 | 0.89[YRI][hapmap] |
| rs17867252 | 0.88[YRI][hapmap] |
| rs17867319 | 0.95[AFR][1000 genomes] |
| rs17869249 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs17869347 | 0.88[YRI][hapmap] |
| rs17875028 | 0.88[YRI][hapmap] |
| rs73720662 | 0.80[AFR][1000 genomes] |
| rs73720663 | 0.80[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
