Variant report

Variant	rs17865483
Chromosome Location	chr7:126621876-126621877
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10231192	1.00[MEX][hapmap]
rs10239617	1.00[CHB][hapmap]
rs10245486	0.92[ASW][hapmap];1.00[CHB][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs10274062	1.00[CHB][hapmap];0.95[YRI][hapmap]
rs11973014	0.92[ASW][hapmap];1.00[CHB][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap]
rs11973055	1.00[MEX][hapmap]
rs11976917	1.00[MEX][hapmap]
rs11979046	1.00[CHB][hapmap]
rs17865435	1.00[CHB][hapmap]
rs17865495	1.00[CHB][hapmap]
rs17865932	1.00[CHB][hapmap];0.95[YRI][hapmap]
rs17867105	1.00[CHB][hapmap]
rs17867140	1.00[MEX][hapmap]
rs17867256	1.00[MEX][hapmap]
rs17869367	1.00[MEX][hapmap]
rs6948111	1.00[MEX][hapmap]
rs7785880	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889188	chr7:126620555-126646353	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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