Variant report

Variant	rs17865862
Chromosome Location	chr7:126721571-126721572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17865088	1.00[YRI][hapmap]
rs17865221	0.88[YRI][hapmap]
rs17865283	0.88[YRI][hapmap]
rs17865293	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17865313	0.89[YRI][hapmap]
rs17865511	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs17865857	0.88[YRI][hapmap]
rs17866035	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17866144	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17866151	1.00[AFR][1000 genomes]
rs17866240	0.88[YRI][hapmap]
rs17866251	1.00[YRI][hapmap]
rs17866296	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs17866779	0.85[AFR][1000 genomes]
rs17866881	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17866945	0.88[YRI][hapmap]
rs17866947	0.88[YRI][hapmap]
rs17867033	1.00[YRI][hapmap]
rs17867096	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs17867119	0.88[YRI][hapmap]
rs17867202	0.88[YRI][hapmap]
rs17867217	0.88[YRI][hapmap]
rs17867218	0.89[YRI][hapmap]
rs17867252	0.88[YRI][hapmap]
rs17867319	0.95[AFR][1000 genomes]
rs17869249	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17869347	0.88[YRI][hapmap]
rs17875028	0.88[YRI][hapmap]
rs73720662	0.80[AFR][1000 genomes]
rs73720663	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126720200-126721600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links