Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17865088	1.00[YRI][hapmap]
rs17865221	0.87[YRI][hapmap]
rs17865283	0.87[YRI][hapmap]
rs17865293	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17865313	0.88[YRI][hapmap]
rs17865511	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs17865857	0.87[YRI][hapmap]
rs17865862	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17866144	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17866151	0.95[AFR][1000 genomes]
rs17866240	0.87[YRI][hapmap]
rs17866251	1.00[YRI][hapmap]
rs17866296	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs17866779	0.90[AFR][1000 genomes]
rs17866881	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17866945	0.87[YRI][hapmap]
rs17866947	0.87[YRI][hapmap]
rs17867033	1.00[YRI][hapmap]
rs17867096	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs17867119	0.87[YRI][hapmap]
rs17867202	0.87[YRI][hapmap]
rs17867217	0.88[YRI][hapmap]
rs17867218	0.88[YRI][hapmap]
rs17867252	0.87[YRI][hapmap]
rs17867319	1.00[AFR][1000 genomes]
rs17869249	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17869347	0.87[YRI][hapmap]
rs17875028	0.87[YRI][hapmap]
rs73720662	0.85[AFR][1000 genomes]
rs73720663	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126734600-126735200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: