Variant report

Variant	rs17866153
Chromosome Location	chr7:126869221-126869222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126859803..126861412-chr7:126868321..126870477,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARF5-3	chr7:126868427-126869975	ENSG00000236340.1
2	lnc-ARF5-3	chr7:126868427-126869975	NR_110195

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10234740	0.82[CHB][hapmap]
rs10487472	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563782	0.82[CEU][hapmap]
rs12334074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs17644601	0.82[CEU][hapmap]
rs17862293	0.82[CEU][hapmap]
rs17862320	0.82[CEU][hapmap]
rs17862333	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17862345	0.82[EUR][1000 genomes]
rs17863211	0.82[CEU][hapmap]
rs17863242	0.85[CEU][hapmap]
rs17863253	0.82[CHB][hapmap]
rs17863257	0.82[EUR][1000 genomes]
rs17864127	0.82[CEU][hapmap]
rs17864160	0.85[CEU][hapmap]
rs17864165	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17864170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs17864185	1.00[CEU][hapmap]
rs17864189	1.00[CEU][hapmap]
rs17865066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs17865434	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs17866314	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17866414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs17866742	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17866745	0.82[EUR][1000 genomes]
rs17866749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs17867065	1.00[CEU][hapmap]
rs17867232	0.82[EUR][1000 genomes]
rs17867322	0.82[CHB][hapmap]
rs17867759	0.82[CEU][hapmap]
rs17867764	0.82[CEU][hapmap]
rs17867770	0.82[CEU][hapmap]
rs17867806	1.00[CEU][hapmap]
rs17867809	1.00[CEU][hapmap]
rs17867821	0.82[EUR][1000 genomes]
rs17869212	0.82[CEU][hapmap]
rs17869261	1.00[CEU][hapmap]
rs17869284	1.00[CEU][hapmap]
rs17869543	0.82[EUR][1000 genomes]
rs2237793	0.82[CEU][hapmap]
rs2299554	1.00[CEU][hapmap]
rs62468892	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62468898	0.86[EUR][1000 genomes]
rs62468908	0.82[EUR][1000 genomes]
rs6957728	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126869200-126869400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:126869200-126869600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:126869200-126869600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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