Variant report

Variant	rs17866742
Chromosome Location	chr7:126867040-126867041
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126855088..126856692-chr7:126866803..126869023,2	K562	blood:

Variant related genes	Relation type
ENSG00000236340	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10487472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563782	0.82[CEU][hapmap]
rs12334074	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17644601	0.82[CEU][hapmap]
rs17862293	0.82[CEU][hapmap]
rs17862320	0.82[CEU][hapmap]
rs17862333	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17862345	0.82[EUR][1000 genomes]
rs17863211	0.82[CEU][hapmap]
rs17863242	0.85[CEU][hapmap]
rs17863257	0.82[EUR][1000 genomes]
rs17864127	0.82[CEU][hapmap]
rs17864160	0.85[CEU][hapmap]
rs17864165	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17864170	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17864185	1.00[CEU][hapmap]
rs17864189	1.00[CEU][hapmap]
rs17865066	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17865434	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs17866153	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17866314	1.00[CEU][hapmap]
rs17866414	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17866745	0.82[EUR][1000 genomes]
rs17866749	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17867065	1.00[CEU][hapmap]
rs17867232	0.82[EUR][1000 genomes]
rs17867759	0.82[CEU][hapmap]
rs17867764	0.82[CEU][hapmap]
rs17867770	0.82[CEU][hapmap]
rs17867806	1.00[CEU][hapmap]
rs17867809	1.00[CEU][hapmap]
rs17867821	0.82[EUR][1000 genomes]
rs17869212	0.82[CEU][hapmap]
rs17869261	1.00[CEU][hapmap]
rs17869284	1.00[CEU][hapmap]
rs17869543	0.82[EUR][1000 genomes]
rs2237793	0.82[CEU][hapmap]
rs2299554	1.00[CEU][hapmap]
rs62468892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468898	0.86[EUR][1000 genomes]
rs62468908	0.82[EUR][1000 genomes]
rs6957728	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126866000-126867200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:126866600-126867200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:126866600-126867400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:126866800-126867400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:126866800-126867400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr7:126866800-126867600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:126866800-126868000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:126867000-126867200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
9	chr7:126867000-126868400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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