Variant report

Variant	rs17866749
Chromosome Location	chr7:126890902-126890903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126884896..126891192-chr7:126891657..126895737,6	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10487472	1.00[CEU][hapmap];0.87[CHD][hapmap];0.82[EUR][1000 genomes]
rs12334074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862333	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862345	0.91[EUR][1000 genomes]
rs17863242	0.82[CEU][hapmap]
rs17863257	0.91[EUR][1000 genomes]
rs17864160	0.82[CEU][hapmap]
rs17864165	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864185	1.00[CEU][hapmap]
rs17864189	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17865066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17865092	0.82[YRI][hapmap]
rs17865093	0.85[AFR][1000 genomes]
rs17865434	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17866132	0.92[LWK][hapmap];0.82[MKK][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes]
rs17866153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs17866314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs17866414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866742	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17866745	0.91[EUR][1000 genomes]
rs17866909	0.91[YRI][hapmap];0.95[AFR][1000 genomes]
rs17867065	1.00[CEU][hapmap]
rs17867232	0.91[EUR][1000 genomes]
rs17867806	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17867809	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs17867821	0.91[EUR][1000 genomes]
rs17869255	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs17869261	1.00[CEU][hapmap]
rs17869284	1.00[CEU][hapmap]
rs17869543	0.91[EUR][1000 genomes]
rs2299554	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs3779537	1.00[CHD][hapmap]
rs62468892	0.82[EUR][1000 genomes]
rs62468898	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468908	0.91[EUR][1000 genomes]
rs6957728	1.00[CEU][hapmap]
rs7805944	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv819682	chr7:126890804-126895155	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126890200-126891000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
2	chr7:126890200-126894400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:126890600-126891000	Enhancers	Liver	Liver
4	chr7:126890600-126891000	Active TSS	Brain Cingulate Gyrus	brain
5	chr7:126890600-126891800	Bivalent Enhancer	GM12878-XiMat	blood
6	chr7:126890600-126892000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:126890600-126892000	Active TSS	Brain Anterior Caudate	brain
8	chr7:126890600-126892400	Active TSS	Brain Substantia Nigra	brain
9	chr7:126890600-126894400	Active TSS	Brain Angular Gyrus	brain
10	chr7:126890800-126891000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr7:126890800-126891000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr7:126890800-126891000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr7:126890800-126891000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr7:126890800-126891000	Active TSS	Brain Hippocampus Middle	brain
15	chr7:126890800-126891000	Bivalent/Poised TSS	Fetal Brain Female	brain
16	chr7:126890800-126891000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
17	chr7:126890800-126891200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
18	chr7:126890800-126891200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:126890800-126891400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
21	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
24	chr7:126890800-126891400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
25	chr7:126890800-126891400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
26	chr7:126890800-126891600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:126890800-126891800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
28	chr7:126890800-126892400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
29	chr7:126890800-126894400	Active TSS	Brain Inferior Temporal Lobe	brain

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