Variant report

Variant	rs17867105
Chromosome Location	chr7:126589532-126589533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10239617	1.00[CHB][hapmap]
rs10245486	1.00[CHB][hapmap]
rs10274062	1.00[CHB][hapmap]
rs11973014	1.00[CHB][hapmap]
rs11973055	0.80[YRI][hapmap]
rs11979046	1.00[CHB][hapmap]
rs11980252	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs17865083	0.84[YRI][hapmap]
rs17865435	1.00[CHB][hapmap]
rs17865483	1.00[CHB][hapmap]
rs17865495	1.00[CHB][hapmap]
rs17865929	1.00[AMR][1000 genomes]
rs17865932	1.00[CHB][hapmap]
rs17866899	0.84[YRI][hapmap]
rs17867140	1.00[AMR][1000 genomes]
rs17869312	1.00[AMR][1000 genomes]
rs17869367	0.80[YRI][hapmap]
rs58714513	1.00[AMR][1000 genomes]
rs59143584	1.00[AMR][1000 genomes]
rs61669096	1.00[AMR][1000 genomes]
rs6948111	0.90[YRI][hapmap]
rs73723528	1.00[AMR][1000 genomes]
rs7785880	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv608378	chr7:126570120-126597132	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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