Variant report

Variant	rs17867200
Chromosome Location	chr7:126613190-126613191
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17865026	1.00[YRI][hapmap]
rs17865221	1.00[AMR][1000 genomes]
rs17865283	1.00[AMR][1000 genomes]
rs17865495	1.00[YRI][hapmap]
rs17865857	1.00[AMR][1000 genomes]
rs17865928	1.00[YRI][hapmap]
rs17866334	0.82[YRI][hapmap]
rs17866945	1.00[AMR][1000 genomes]
rs17866947	1.00[AMR][1000 genomes]
rs17867119	1.00[AMR][1000 genomes]
rs17867199	1.00[YRI][hapmap]
rs17867252	1.00[AMR][1000 genomes]
rs17868689	1.00[YRI][hapmap]
rs17869476	0.85[YRI][hapmap]
rs17869538	1.00[YRI][hapmap]
rs17869720	0.85[YRI][hapmap]
rs17875028	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17867200	PLA2G16	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126613000-126613400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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