Variant report

Variant	rs17867232
Chromosome Location	chr7:126930551-126930552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10230771	1.00[JPT][hapmap]
rs10243337	1.00[JPT][hapmap]
rs10243876	1.00[JPT][hapmap]
rs10487472	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10808228	1.00[JPT][hapmap]
rs10954150	1.00[JPT][hapmap]
rs12334074	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12706789	1.00[JPT][hapmap]
rs12706790	1.00[JPT][hapmap]
rs17644601	0.82[CEU][hapmap]
rs17862293	0.82[CEU][hapmap]
rs17862320	0.82[CEU][hapmap]
rs17862333	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17862345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863211	0.82[CEU][hapmap]
rs17863242	0.85[CEU][hapmap]
rs17863257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17864160	0.85[CEU][hapmap]
rs17864165	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17864170	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17864185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864189	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17865066	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17865434	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17865997	1.00[JPT][hapmap]
rs17866153	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17866314	1.00[CEU][hapmap]
rs17866414	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17866742	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17866745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866749	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17867037	1.00[JPT][hapmap]
rs17867065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17867759	0.82[CEU][hapmap]
rs17867764	0.82[CEU][hapmap]
rs17867770	0.82[CEU][hapmap]
rs17867806	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17867809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17867821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17869212	0.82[CEU][hapmap]
rs17869261	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17869284	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17869543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17875093	0.81[ASN][1000 genomes]
rs1833067	1.00[JPT][hapmap]
rs2237793	0.82[CEU][hapmap]
rs2299554	1.00[CEU][hapmap]
rs4731360	1.00[JPT][hapmap]
rs62468892	0.82[EUR][1000 genomes]
rs62468898	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62468908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957728	1.00[CEU][hapmap]
rs7808943	1.00[JPT][hapmap]
rs7809156	1.00[JPT][hapmap]
rs7809187	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126928200-126930600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:126929600-126931000	Enhancers	Fetal Stomach	stomach
3	chr7:126930000-126931600	Enhancers	Fetal Brain Male	brain

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