Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr7:126747357-126748920	HL-60	blood:	n/a	chr7:126747972-126747985 chr7:126747977-126747986 chr7:126747972-126747992 chr7:126748353-126748362 chr7:126747978-126747992 chr7:126747973-126747991 chr7:126747972-126747981 chr7:126747972-126747992 chr7:126747972-126747992 chr7:126747975-126747988

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126746979..126748949-chr7:126761231..126762876,2	K562	blood:
2	chr7:126748685..126750706-chr7:126758876..126761407,2	K562	blood:

Variant related genes	Relation type
GRM8	TF binding region

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10487470	1.00[JPT][hapmap]
rs11563782	1.00[CEU][hapmap]
rs12334074	0.82[CEU][hapmap]
rs17644601	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17862293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs17862309	1.00[JPT][hapmap]
rs17862333	0.82[CEU][hapmap]
rs17863210	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17863211	1.00[CEU][hapmap]
rs17863212	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17863237	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs17864127	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17864142	0.82[CEU][hapmap]
rs17864153	0.82[CEU][hapmap]
rs17864154	0.82[CEU][hapmap]
rs17864156	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs17864165	0.82[CEU][hapmap]
rs17864170	0.82[CEU][hapmap]
rs17865066	0.82[CEU][hapmap]
rs17866036	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17866153	0.82[CEU][hapmap]
rs17866414	0.82[CEU][hapmap]
rs17866742	0.82[CEU][hapmap]
rs17867065	0.82[CEU][hapmap]
rs17867759	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17867770	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17867775	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17867806	0.82[CEU][hapmap]
rs17869212	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17869630	1.00[JPT][hapmap]
rs1894730	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2023641	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2237793	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6467111	1.00[JPT][hapmap]
rs7794734	1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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