Variant report
| Variant | rs17867770 |
|---|---|
| Chromosome Location | chr7:126764936-126764937 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11563782 | 1.00[CEU][hapmap] |
| rs12334074 | 0.82[CEU][hapmap] |
| rs17644601 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17862293 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17862309 | 1.00[JPT][hapmap] |
| rs17862333 | 0.82[CEU][hapmap] |
| rs17863211 | 1.00[CEU][hapmap] |
| rs17863212 | 0.81[ASN][1000 genomes] |
| rs17863237 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs17864127 | 1.00[CEU][hapmap] |
| rs17864142 | 0.82[CEU][hapmap] |
| rs17864153 | 0.82[CEU][hapmap] |
| rs17864154 | 0.82[CEU][hapmap] |
| rs17864156 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs17864165 | 0.82[CEU][hapmap] |
| rs17864170 | 0.82[CEU][hapmap] |
| rs17865066 | 0.82[CEU][hapmap] |
| rs17866036 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs17866153 | 0.82[CEU][hapmap] |
| rs17866348 | 1.00[JPT][hapmap] |
| rs17866414 | 0.82[CEU][hapmap] |
| rs17866742 | 0.82[CEU][hapmap] |
| rs17867065 | 0.82[CEU][hapmap] |
| rs17867759 | 1.00[CEU][hapmap] |
| rs17867764 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17867775 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17867806 | 0.82[CEU][hapmap] |
| rs17869212 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs2023641 | 0.81[ASN][1000 genomes] |
| rs2237793 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs6467111 | 1.00[JPT][hapmap] |
| rs7794734 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
