Variant report
| Variant | rs17867775 |
|---|---|
| Chromosome Location | chr7:126790947-126790948 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF800-4 | chr7:126787075-126792049 | NONHSAT123130 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10487470 | 1.00[JPT][hapmap] |
| rs11563505 | 0.83[TSI][hapmap] |
| rs17644601 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17862293 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17862309 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs17862310 | 0.82[CEU][hapmap];0.94[YRI][hapmap] |
| rs17863210 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17863212 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17863237 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17863242 | 0.82[CEU][hapmap] |
| rs17864127 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17864142 | 1.00[CEU][hapmap] |
| rs17864153 | 1.00[CEU][hapmap];0.94[YRI][hapmap] |
| rs17864154 | 1.00[CEU][hapmap] |
| rs17864156 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17864160 | 0.82[CEU][hapmap] |
| rs17866036 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17866348 | 1.00[JPT][hapmap] |
| rs17867759 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17867764 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs17867770 | 1.00[JPT][hapmap] |
| rs17869212 | 1.00[JPT][hapmap] |
| rs17869630 | 1.00[JPT][hapmap] |
| rs1894730 | 1.00[CHB][hapmap] |
| rs2023641 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2237793 | 1.00[JPT][hapmap] |
| rs6467111 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7794734 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1027369 | chr7:126772111-126798871 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
