Variant report

Variant	rs17867809
Chromosome Location	chr7:126900680-126900681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126900301..126902703-chr7:127030705..127032341,2	MCF-7	breast:
2	chr7:126884819..126886507-chr7:126900468..126902207,2	K562	blood:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10229821	0.82[ASN][1000 genomes]
rs10230771	1.00[JPT][hapmap]
rs10240042	0.89[AFR][1000 genomes]
rs10243337	1.00[JPT][hapmap]
rs10243876	1.00[JPT][hapmap]
rs10487472	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs10808228	1.00[JPT][hapmap]
rs10954150	1.00[JPT][hapmap]
rs12334074	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12706789	1.00[JPT][hapmap]
rs12706790	1.00[JPT][hapmap]
rs17862333	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17862345	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17863242	0.82[CEU][hapmap]
rs17863257	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864160	0.82[CEU][hapmap]
rs17864165	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17864170	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17864185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs17864189	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs17865066	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17865434	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17865997	1.00[JPT][hapmap]
rs17866153	1.00[CEU][hapmap]
rs17866314	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17866414	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17866742	1.00[CEU][hapmap]
rs17866745	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17866749	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs17867037	1.00[JPT][hapmap]
rs17867065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17867232	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17867806	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17867821	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17869261	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17869284	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17869543	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17875093	0.88[ASN][1000 genomes]
rs1833067	1.00[JPT][hapmap]
rs2299554	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs4731360	1.00[JPT][hapmap]
rs62468898	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62468908	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6957728	1.00[CEU][hapmap]
rs73461317	0.82[ASN][1000 genomes]
rs7808943	1.00[JPT][hapmap]
rs7809156	1.00[JPT][hapmap]
rs7809187	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3373059	chr7:126897516-126901714	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126894200-126902800	Weak transcription	Right Atrium	heart
2	chr7:126899600-126903000	Weak transcription	Pancreas	Pancrea
3	chr7:126899600-126904600	Weak transcription	Gastric	stomach

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