Variant report
| Variant | rs17869284 |
|---|---|
| Chromosome Location | chr7:126983642-126983643 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000048405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10230771 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs10243337 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs10243876 | 1.00[JPT][hapmap] |
| rs10487472 | 1.00[CEU][hapmap] |
| rs10808228 | 1.00[JPT][hapmap] |
| rs10954150 | 1.00[JPT][hapmap] |
| rs12334074 | 1.00[CEU][hapmap] |
| rs12706789 | 1.00[JPT][hapmap] |
| rs12706790 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs17862320 | 0.82[CEU][hapmap] |
| rs17862333 | 1.00[CEU][hapmap] |
| rs17863236 | 1.00[AFR][1000 genomes] |
| rs17863242 | 0.85[CEU][hapmap] |
| rs17864160 | 0.85[CEU][hapmap] |
| rs17864165 | 1.00[CEU][hapmap] |
| rs17864170 | 1.00[CEU][hapmap] |
| rs17864185 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17864189 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17865066 | 1.00[CEU][hapmap] |
| rs17865434 | 0.85[CEU][hapmap] |
| rs17865997 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs17866153 | 1.00[CEU][hapmap] |
| rs17866314 | 1.00[CEU][hapmap] |
| rs17866414 | 1.00[CEU][hapmap] |
| rs17866742 | 1.00[CEU][hapmap] |
| rs17866749 | 1.00[CEU][hapmap] |
| rs17867037 | 1.00[JPT][hapmap] |
| rs17867065 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17867806 | 1.00[CEU][hapmap] |
| rs17867809 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17867832 | 0.81[CHB][hapmap] |
| rs17869261 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1833067 | 1.00[JPT][hapmap] |
| rs2299554 | 1.00[CEU][hapmap] |
| rs4731360 | 1.00[JPT][hapmap] |
| rs6957728 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6961591 | 0.91[CHB][hapmap] |
| rs7808943 | 1.00[JPT][hapmap] |
| rs7809156 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs7809187 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:126982000-126987000 | Weak transcription | HSMM | muscle |
