Variant report
| Variant | rs17869367 |
|---|---|
| Chromosome Location | chr7:126589351-126589352 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10231192 | 0.87[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.89[YRI][hapmap] |
| rs10245486 | 1.00[MEX][hapmap] |
| rs10263260 | 0.89[YRI][hapmap] |
| rs11973055 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap] |
| rs11973715 | 1.00[ASW][hapmap];0.80[MKK][hapmap] |
| rs11976917 | 1.00[MEX][hapmap];0.89[YRI][hapmap] |
| rs11980252 | 1.00[YRI][hapmap] |
| rs17864959 | 1.00[AMR][1000 genomes] |
| rs17865063 | 1.00[AMR][1000 genomes] |
| rs17865083 | 1.00[YRI][hapmap] |
| rs17865435 | 0.89[YRI][hapmap] |
| rs17865483 | 1.00[MEX][hapmap] |
| rs17866899 | 1.00[YRI][hapmap] |
| rs17866903 | 1.00[AMR][1000 genomes] |
| rs17867105 | 0.80[YRI][hapmap] |
| rs17867140 | 1.00[MEX][hapmap] |
| rs17867256 | 1.00[MEX][hapmap] |
| rs17869343 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17869416 | 1.00[AMR][1000 genomes] |
| rs17875030 | 1.00[AMR][1000 genomes] |
| rs55849147 | 0.84[AFR][1000 genomes] |
| rs56742208 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6948111 | 1.00[MEX][hapmap];0.89[YRI][hapmap] |
| rs6954791 | 1.00[AMR][1000 genomes] |
| rs6958101 | 0.86[MKK][hapmap] |
| rs73723522 | 1.00[AMR][1000 genomes] |
| rs7785880 | 0.89[YRI][hapmap] |
| rs7795592 | 1.00[ASW][hapmap];0.86[MKK][hapmap] |
| rs7800969 | 0.89[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv608378 | chr7:126570120-126597132 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
