Variant report
| Variant | rs17869369 |
|---|---|
| Chromosome Location | chr7:126655707-126655708 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARF5-15 | chr7:126655663-126657210 | ucscGeneNc_uc003vlv_2 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10081237 | 1.00[AMR][1000 genomes] |
| rs10225020 | 1.00[YRI][hapmap] |
| rs10233335 | 1.00[YRI][hapmap] |
| rs10239617 | 1.00[AMR][1000 genomes] |
| rs10240626 | 1.00[AMR][1000 genomes] |
| rs10252488 | 1.00[AMR][1000 genomes] |
| rs10254174 | 1.00[AMR][1000 genomes] |
| rs10262861 | 1.00[AMR][1000 genomes] |
| rs17865523 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17866100 | 1.00[YRI][hapmap] |
| rs17866102 | 1.00[YRI][hapmap] |
| rs17866773 | 1.00[YRI][hapmap] |
| rs17867043 | 1.00[AMR][1000 genomes] |
| rs17867257 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17869242 | 0.83[YRI][hapmap] |
| rs17869370 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv608379 | chr7:126643692-126657545 | Enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv971543 | chr7:126653280-126657192 | Inactive region | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
