Variant report

Variant	rs17869590
Chromosome Location	chr7:126634367-126634368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17864955	1.00[AMR][1000 genomes]
rs17865085	1.00[AMR][1000 genomes]
rs17865260	1.00[AMR][1000 genomes]
rs17865396	1.00[AMR][1000 genomes]
rs17865430	1.00[YRI][hapmap]
rs17865859	1.00[AMR][1000 genomes]
rs17865986	1.00[AMR][1000 genomes]
rs17866784	1.00[AMR][1000 genomes]
rs17866946	1.00[AMR][1000 genomes]
rs17868673	1.00[AMR][1000 genomes]
rs17869417	1.00[AMR][1000 genomes]
rs17869591	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17869778	1.00[AMR][1000 genomes]
rs17875006	1.00[AMR][1000 genomes]
rs17875053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889188	chr7:126620555-126646353	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126634200-126635400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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