Variant report

Variant	rs17875053
Chromosome Location	chr7:126696773-126696774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17864955	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865085	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865135	1.00[YRI][hapmap]
rs17865260	1.00[AMR][1000 genomes]
rs17865396	1.00[AMR][1000 genomes]
rs17865397	1.00[YRI][hapmap]
rs17865859	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865986	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866407	1.00[YRI][hapmap]
rs17866775	1.00[YRI][hapmap]
rs17866784	1.00[AMR][1000 genomes]
rs17866946	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17868673	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869417	1.00[AMR][1000 genomes]
rs17869567	1.00[YRI][hapmap]
rs17869590	1.00[AMR][1000 genomes]
rs17869778	1.00[AMR][1000 genomes]
rs17875006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126695800-126696800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:126696200-126697200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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