Variant report

Variant	rs1788146
Chromosome Location	chr8:100726548-100726549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100719530..100723124-chr8:100724198..100728013,4	K562	blood:

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10504993	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10504994	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10955213	0.95[JPT][hapmap]
rs10955214	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10955215	0.82[GIH][hapmap];0.95[JPT][hapmap]
rs10955216	0.83[ASN][1000 genomes]
rs10955218	0.84[ASN][1000 genomes]
rs10955219	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11787264	0.83[ASN][1000 genomes]
rs12541307	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12541910	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12542004	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12542214	0.95[JPT][hapmap]
rs12543912	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12544405	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12544690	0.85[AMR][1000 genomes]
rs12545238	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12546122	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12546643	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12547022	0.85[ASN][1000 genomes]
rs12548482	0.83[ASN][1000 genomes]
rs12549452	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12549477	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12550139	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12676915	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12677357	0.84[ASN][1000 genomes]
rs1386373	0.82[ASN][1000 genomes]
rs1386375	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1449784	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1449785	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1449792	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1487022	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1487024	0.83[ASN][1000 genomes]
rs1502132	0.82[ASN][1000 genomes]
rs1545959	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1615498	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1616204	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1617299	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667631	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1667633	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1667634	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1667635	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667637	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667638	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667639	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667642	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667643	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667644	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16897430	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs16897435	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs16897440	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs16897453	0.83[ASN][1000 genomes]
rs16897473	0.84[ASN][1000 genomes]
rs16897489	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16897493	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16897501	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16897514	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16897517	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16897526	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16897527	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16897528	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16897533	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16897536	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16897542	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16897546	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1788143	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1788145	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1788147	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1788148	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1788150	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1788151	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1788153	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1788154	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1788155	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1788156	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1788158	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1788162	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1788163	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1825754	0.80[ASN][1000 genomes]
rs1825755	0.82[ASN][1000 genomes]
rs1949123	0.81[ASN][1000 genomes]
rs2035617	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2035618	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2167102	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2280060	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2442757	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2510201	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2510203	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3103100	0.80[ASN][1000 genomes]
rs3103103	0.81[ASN][1000 genomes]
rs3105168	0.80[ASN][1000 genomes]
rs3105169	0.80[ASN][1000 genomes]
rs3105170	0.80[ASN][1000 genomes]
rs3105174	0.80[ASN][1000 genomes]
rs3105176	0.81[ASN][1000 genomes]
rs3105177	0.81[ASN][1000 genomes]
rs3134166	0.80[ASN][1000 genomes]
rs3134167	0.80[ASN][1000 genomes]
rs3134168	0.81[ASN][1000 genomes]
rs3134171	0.81[ASN][1000 genomes]
rs34273034	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35462366	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4391399	0.84[ASN][1000 genomes]
rs57281571	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58152103	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6468690	0.81[GIH][hapmap];0.95[JPT][hapmap]
rs6468691	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6986467	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7004966	0.85[ASN][1000 genomes]
rs7008019	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7009315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7016477	0.80[ASN][1000 genomes]
rs717365	0.82[GIH][hapmap];0.95[JPT][hapmap]
rs72674643	0.85[ASN][1000 genomes]
rs72674647	0.86[ASN][1000 genomes]
rs72674650	0.82[ASN][1000 genomes]
rs72674652	0.83[ASN][1000 genomes]
rs72674679	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72674684	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72674687	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72674689	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72674702	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72676209	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72676216	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72676220	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72676221	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72676228	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7462767	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7816355	0.83[ASN][1000 genomes]
rs7816771	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7816837	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7829651	0.83[ASN][1000 genomes]
rs7832109	0.83[ASN][1000 genomes]
rs7835824	0.83[ASN][1000 genomes]
rs7837577	0.86[ASN][1000 genomes]
rs7838809	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9693360	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100687000-100739800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:100699800-100731600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:100699800-100733200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:100700400-100733800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:100707600-100732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:100710200-100739800	Weak transcription	Psoas Muscle	Psoas
7	chr8:100710200-100785000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:100712800-100729400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:100713000-100732800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr8:100713000-100733200	Weak transcription	Left Ventricle	heart
11	chr8:100713200-100732800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr8:100713200-100746800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:100713400-100729400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr8:100715200-100727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:100715200-100737400	Weak transcription	Fetal Intestine Large	intestine
16	chr8:100716400-100739000	Weak transcription	Fetal Kidney	kidney
17	chr8:100716800-100726800	Weak transcription	Thymus	Thymus
18	chr8:100716800-100744400	Weak transcription	Aorta	Aorta
19	chr8:100717400-100736600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:100717600-100727000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:100718200-100733200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:100718600-100732600	Weak transcription	Ovary	ovary
23	chr8:100718800-100726600	Weak transcription	Primary T cells from cord blood	blood
24	chr8:100719200-100726800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:100719600-100726600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:100719600-100732600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:100719600-100750600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:100720000-100737000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr8:100721600-100728200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:100721600-100729600	Weak transcription	Primary B cells from cord blood	blood
31	chr8:100725600-100727000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr8:100725600-100779800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:100725800-100727800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr8:100726000-100727000	Weak transcription	Colon Smooth Muscle	Colon
35	chr8:100726000-100727200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:100726000-100740200	Weak transcription	HSMMtube	muscle
37	chr8:100726200-100726800	Enhancers	Dnd41	blood
38	chr8:100726200-100727400	Weak transcription	Liver	Liver
39	chr8:100726400-100727000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr8:100726400-100728600	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links