Variant report

Variant	rs1788155
Chromosome Location	chr8:100798740-100798741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:100794282..100798252-chr8:100798462..100800680,3	K562	blood:
2	chr8:100798684..100800613-chr8:100802187..100804847,2	K562	blood:
3	chr8:100781337..100783402-chr8:100798326..100800957,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10955219	0.82[EUR][1000 genomes]
rs12541307	0.81[EUR][1000 genomes]
rs12541910	0.81[EUR][1000 genomes]
rs12542004	0.81[EUR][1000 genomes]
rs12544405	0.81[EUR][1000 genomes]
rs12545238	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12546643	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12550139	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1386375	0.81[EUR][1000 genomes]
rs1449784	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1449785	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1449792	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1615498	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1616204	0.84[AMR][1000 genomes]
rs1617299	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667631	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1667633	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1667634	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667635	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667637	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667638	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1667639	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667642	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667643	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667644	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16897514	0.81[EUR][1000 genomes]
rs16897517	0.81[EUR][1000 genomes]
rs16897526	0.81[EUR][1000 genomes]
rs16897527	0.81[EUR][1000 genomes]
rs16897528	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16897533	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16897536	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16897542	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16897546	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1788143	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1788145	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1788146	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1788147	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1788148	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1788150	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1788151	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1788153	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1788154	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1788156	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1788158	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1788162	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1788163	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2035617	0.82[EUR][1000 genomes]
rs2035618	0.81[EUR][1000 genomes]
rs2167102	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2442757	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2510201	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2510203	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35462366	0.81[EUR][1000 genomes]
rs58152103	0.81[EUR][1000 genomes]
rs7008019	0.81[EUR][1000 genomes]
rs7009315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs72674689	0.81[EUR][1000 genomes]
rs72674702	0.81[EUR][1000 genomes]
rs72676209	0.81[EUR][1000 genomes]
rs72676216	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72676220	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72676221	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72676228	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7462767	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100766200-100815600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:100772400-100824400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:100775000-100822400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:100776600-100805800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:100777600-100807800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:100777600-100809600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:100777800-100807200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:100778000-100806400	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:100778400-100857800	Weak transcription	Spleen	Spleen
10	chr8:100779800-100801800	Weak transcription	Fetal Brain Male	brain
11	chr8:100780400-100799000	Weak transcription	Thymus	Thymus
12	chr8:100780400-100810200	Weak transcription	Aorta	Aorta
13	chr8:100780400-100810600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:100780400-100816400	Weak transcription	Lung	lung
15	chr8:100780600-100799800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:100780600-100801200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr8:100780600-100802800	Weak transcription	Dnd41	blood
18	chr8:100780600-100810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:100783200-100841000	Weak transcription	Right Ventricle	heart
20	chr8:100783200-100858200	Weak transcription	Gastric	stomach
21	chr8:100783400-100857200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:100783600-100798800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr8:100784400-100801200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:100785200-100807400	Weak transcription	K562	blood
25	chr8:100787400-100798800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:100787600-100799000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:100787600-100801600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:100787600-100812200	Weak transcription	Fetal Thymus	thymus
29	chr8:100787800-100799200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr8:100787800-100803000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:100787800-100804000	Weak transcription	Fetal Intestine Small	intestine
32	chr8:100787800-100831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:100788000-100804600	Weak transcription	Placenta	Placenta
34	chr8:100789600-100803800	Weak transcription	GM12878-XiMat	blood
35	chr8:100789600-100842400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:100789800-100808000	Weak transcription	Osteobl	bone
37	chr8:100791200-100804000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:100791200-100807200	Weak transcription	Fetal Heart	heart
39	chr8:100791400-100861600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:100791600-100799400	Weak transcription	Fetal Kidney	kidney
41	chr8:100791600-100799800	Weak transcription	Brain Substantia Nigra	brain
42	chr8:100791600-100805000	Weak transcription	HSMM	muscle
43	chr8:100791600-100806200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr8:100791600-100812600	Weak transcription	Brain Anterior Caudate	brain
45	chr8:100792200-100808200	Weak transcription	Fetal Brain Female	brain
46	chr8:100792200-100810200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:100793000-100807800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr8:100795400-100810800	Weak transcription	NHDF-Ad	bronchial
49	chr8:100796000-100798800	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr8:100796200-100798800	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links