Variant report

Variant	rs17883208
Chromosome Location	chr11:34494724-34494725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11032656	0.85[EUR][1000 genomes]
rs11032672	0.88[EUR][1000 genomes]
rs11032702	0.89[EUR][1000 genomes]
rs1107573	0.92[EUR][1000 genomes]
rs12269988	0.89[EUR][1000 genomes]
rs12272630	0.89[EUR][1000 genomes]
rs12273124	0.89[EUR][1000 genomes]
rs12285026	0.89[EUR][1000 genomes]
rs12285064	0.89[EUR][1000 genomes]
rs12288793	0.89[EUR][1000 genomes]
rs12293745	0.87[EUR][1000 genomes]
rs12295136	0.92[EUR][1000 genomes]
rs16925514	0.92[EUR][1000 genomes]
rs17884086	0.89[EUR][1000 genomes]
rs57360584	0.89[EUR][1000 genomes]
rs58817388	0.92[EUR][1000 genomes]
rs59468184	0.92[EUR][1000 genomes]
rs7114869	0.92[EUR][1000 genomes]
rs7121907	0.89[EUR][1000 genomes]
rs7125892	0.87[EUR][1000 genomes]
rs73436768	0.89[EUR][1000 genomes]
rs9282626	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34470800-34495600	Strong transcription	Stomach Smooth Muscle	stomach
2	chr11:34471400-34495000	Strong transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:34471400-34496400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:34471600-34495200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:34471600-34496800	Strong transcription	Duodenum Mucosa	Duodenum
6	chr11:34474000-34496800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:34476200-34495200	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:34477200-34495200	Strong transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:34482400-34495000	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr11:34483400-34501600	Weak transcription	HMEC	breast
11	chr11:34487800-34495000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:34487800-34496600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:34487800-34496600	Strong transcription	Hela-S3	cervix
14	chr11:34487800-34497000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:34488000-34496400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:34488800-34495200	Strong transcription	Ovary	ovary
17	chr11:34489000-34495200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:34489200-34494800	Strong transcription	Primary hematopoietic stem cells	blood
19	chr11:34489200-34495200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:34489200-34495600	Strong transcription	Primary B cells from cord blood	blood
21	chr11:34489400-34494800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:34489400-34495200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:34489400-34496400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:34489400-34496600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:34489400-34496800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:34489600-34495000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:34489600-34496400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:34489600-34496800	Strong transcription	Adipose Nuclei	Adipose
29	chr11:34489800-34494800	Strong transcription	Fetal Intestine Small	intestine
30	chr11:34489800-34495000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:34489800-34495200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:34489800-34495200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:34489800-34495200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:34489800-34495200	Strong transcription	Thymus	Thymus
35	chr11:34489800-34496000	Strong transcription	Fetal Stomach	stomach
36	chr11:34489800-34496000	Strong transcription	Left Ventricle	heart
37	chr11:34490000-34495200	Strong transcription	Fetal Thymus	thymus
38	chr11:34490000-34495200	Strong transcription	HSMMtube	muscle
39	chr11:34490000-34495600	Strong transcription	Brain Cingulate Gyrus	brain
40	chr11:34490000-34495600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr11:34490000-34496400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:34490200-34495200	Strong transcription	Fetal Brain Female	brain
43	chr11:34490200-34497000	Strong transcription	Primary T cells from cord blood	blood
44	chr11:34490600-34495200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:34490600-34495200	Strong transcription	Fetal Lung	lung
46	chr11:34491000-34497200	Weak transcription	HUVEC	blood vessel
47	chr11:34491000-34501800	Weak transcription	Psoas Muscle	Psoas
48	chr11:34491200-34495000	Strong transcription	Fetal Muscle Leg	muscle
49	chr11:34491200-34496000	Weak transcription	NHEK	skin
50	chr11:34491200-34496600	Weak transcription	Fetal Heart	heart

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