The 2.0 version of rSNPBase

Variant report

Variant rs17883802
Chromosome Location chr13:96363065-96363066
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:96337600-96364200 Weak transcription Ovary ovary
2 chr13:96347000-96377600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr13:96350800-96363800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr13:96350800-96365400 Weak transcription HSMMtube muscle
5 chr13:96351000-96363600 Weak transcription Colonic Mucosa Colon
6 chr13:96351000-96365800 Weak transcription Brain Anterior Caudate brain
7 chr13:96351000-96365800 Weak transcription Fetal Brain Male brain
8 chr13:96351000-96368600 Weak transcription Lung lung
9 chr13:96354200-96364600 Weak transcription Brain Angular Gyrus brain
10 chr13:96355000-96364800 Weak transcription Esophagus oesophagus
11 chr13:96355600-96364000 Weak transcription HepG2 liver
12 chr13:96355800-96364000 Weak transcription Stomach Smooth Muscle stomach
13 chr13:96356000-96365200 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr13:96356000-96372400 Weak transcription Rectal Smooth Muscle rectum
15 chr13:96356200-96363200 Weak transcription HMEC breast
16 chr13:96356400-96363800 Weak transcription Fetal Kidney kidney
17 chr13:96356600-96393600 Weak transcription Right Ventricle heart
18 chr13:96356800-96366000 Weak transcription Hela-S3 cervix
19 chr13:96358600-96363400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
20 chr13:96358800-96365600 Weak transcription Brain Hippocampus Middle brain
21 chr13:96359000-96364200 Weak transcription Psoas Muscle Psoas
22 chr13:96359400-96363200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr13:96359400-96386200 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr13:96359800-96368000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr13:96359800-96379200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr13:96360000-96363200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr13:96360000-96364600 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr13:96360000-96364800 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr13:96360200-96363800 Weak transcription Primary T killer memory cells from peripheral blood blood
30 chr13:96360200-96364200 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr13:96360200-96365600 Weak transcription Brain Inferior Temporal Lobe brain
32 chr13:96360400-96365400 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr13:96360400-96369400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr13:96360600-96364600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr13:96360600-96364600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr13:96360600-96367200 Weak transcription Gastric stomach
37 chr13:96360600-96379200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr13:96360600-96383000 Weak transcription K562 blood
39 chr13:96360600-96384000 Weak transcription Small Intestine intestine
40 chr13:96360800-96364400 Weak transcription HUVEC blood vessel
41 chr13:96360800-96365200 Weak transcription Brain Cingulate Gyrus brain
42 chr13:96360800-96365800 Weak transcription Placenta Amnion Placenta Amnion
43 chr13:96360800-96374400 Weak transcription Colon Smooth Muscle Colon
44 chr13:96361000-96367000 Strong transcription Primary T cells fromperipheralblood blood
45 chr13:96361000-96367200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr13:96361000-96368600 Weak transcription Pancreas Pancrea
47 chr13:96361000-96371000 Weak transcription Aorta Aorta
48 chr13:96361000-96380600 Weak transcription Fetal Heart heart
49 chr13:96361000-96393600 Weak transcription Spleen Spleen
50 chr13:96361200-96363600 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015