Variant report

Variant	rs17884086
Chromosome Location	chr11:34471066-34471067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34469619..34471124-chr11:34484849..34487654,2	K562	blood:
2	chr11:34465093..34466959-chr11:34469031..34471331,3	MCF-7	breast:
3	chr11:34463426..34466853-chr11:34467996..34471084,4	K562	blood:
4	chr11:34470791..34472988-chr11:34473448..34475474,2	K562	blood:
5	chr11:34460468..34462500-chr11:34469839..34471899,2	MCF-7	breast:
6	chr11:34468515..34471124-chr11:34484849..34487654,3	K562	blood:

Variant related genes	Relation type
ENSG00000121691	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11032656	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11032672	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11032702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107573	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12269988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275712	1.00[ASN][1000 genomes]
rs12285026	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285064	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288793	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293745	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295136	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16925514	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17883208	0.89[EUR][1000 genomes]
rs57360584	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58817388	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59468184	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7114869	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7121907	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125892	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73436768	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926613	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9282626	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34461400-34472200	Weak transcription	Aorta	Aorta
2	chr11:34461400-34473200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:34461400-34482800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34461600-34471400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:34461800-34471400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:34461800-34471400	Weak transcription	Placenta	Placenta
7	chr11:34461800-34471400	Weak transcription	HSMM	muscle
8	chr11:34461800-34471400	Weak transcription	NH-A	brain
9	chr11:34461800-34471400	Weak transcription	NHEK	skin
10	chr11:34461800-34472200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:34461800-34472200	Weak transcription	Esophagus	oesophagus
12	chr11:34461800-34472200	Weak transcription	Lung	lung
13	chr11:34461800-34485800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:34462000-34471400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:34462000-34471400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:34462000-34471400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:34462000-34471400	Weak transcription	HUVEC	blood vessel
18	chr11:34462000-34471400	Weak transcription	NHLF	lung
19	chr11:34462000-34472200	Weak transcription	Fetal Stomach	stomach
20	chr11:34462000-34472200	Weak transcription	Right Ventricle	heart
21	chr11:34462000-34474600	Weak transcription	Fetal Brain Male	brain
22	chr11:34462000-34477600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:34462600-34471400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:34463400-34471400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:34463400-34473600	Weak transcription	Fetal Intestine Small	intestine
26	chr11:34463600-34471200	Weak transcription	Brain Substantia Nigra	brain
27	chr11:34463600-34471200	Weak transcription	Fetal Brain Female	brain
28	chr11:34463600-34472400	Weak transcription	A549	lung
29	chr11:34464400-34471400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:34464600-34471400	Weak transcription	Right Atrium	heart
31	chr11:34465600-34471400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:34466000-34471400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:34466000-34471400	Weak transcription	Ovary	ovary
34	chr11:34466000-34471400	Weak transcription	Spleen	Spleen
35	chr11:34466000-34479000	Weak transcription	Small Intestine	intestine
36	chr11:34468000-34481000	Weak transcription	Stomach Mucosa	stomach
37	chr11:34468200-34471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:34468200-34471400	Weak transcription	Gastric	stomach
39	chr11:34469000-34471200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:34469000-34471200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:34469000-34471400	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:34469200-34471400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:34469200-34471400	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr11:34469400-34471200	Enhancers	Primary T cells fromperipheralblood	blood
45	chr11:34469400-34471400	Weak transcription	Brain Angular Gyrus	brain
46	chr11:34469800-34471200	Enhancers	HMEC	breast
47	chr11:34469800-34472000	Weak transcription	Fetal Heart	heart
48	chr11:34469800-34479000	Strong transcription	HepG2	liver
49	chr11:34469800-34487400	Strong transcription	Hela-S3	cervix
50	chr11:34470000-34471200	Weak transcription	Brain Cingulate Gyrus	brain

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