Variant report

Variant	rs17885081
Chromosome Location	chr13:96330739-96330740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr13:96328102-96331205	SK-N-SH	brain:	n/a	n/a
2	ZNF384	chr13:96330420-96330789	GM12878	blood:	n/a	n/a
3	POLR2A	chr13:96328280-96330829	GM12878	blood:	n/a	n/a
4	ZKSCAN1	chr13:96330604-96330896	Hela-S3	cervix:	n/a	n/a
5	MXI1	chr13:96328260-96330830	IMR90	lung:	n/a	n/a
6	POLR2A	chr13:96327481-96330995	MCF10A-Er-Src	breast:	n/a	n/a
7	MAZ	chr13:96328362-96330954	IMR90	lung:	n/a	chr13:96329358-96329368
8	WRNIP1	chr13:96330727-96330829	GM12878	blood:	n/a	n/a
9	ZNF384	chr13:96330399-96331030	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:96329213..96330784-chr13:96346091..96348298,2	MCF-7	breast:
2	chr13:96327826..96331109-chr13:96365382..96368282,3	MCF-7	breast:
3	chr13:96330224..96330806-chr2:182757051..182757713,2	Hela-S3	cervix:

Variant related genes	Relation type
DNAJC3-AS1	TF binding region
ENSG00000232373	Chromatin interaction
ENSG00000227714	Chromatin interaction
ENSG00000251901	Chromatin interaction
ENSG00000138434	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11616953	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11618323	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12430152	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12855055	0.83[AFR][1000 genomes]
rs16951334	0.85[EUR][1000 genomes]
rs17878753	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17879875	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3087341	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3099362	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3099363	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3101570	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35740456	0.86[AFR][1000 genomes]
rs3848077	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3886352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4347496	0.84[EUR][1000 genomes]
rs4409947	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4491364	0.84[ASN][1000 genomes]
rs4526890	0.84[EUR][1000 genomes]
rs7316996	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7318892	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7323408	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7331211	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7331549	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7991405	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9561931	0.86[AFR][1000 genomes]
rs9561939	0.85[AFR][1000 genomes]
rs9584324	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9590310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9590328	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17885081	DZIP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96325600-96332400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:96327000-96330800	Active TSS	Fetal Intestine Large	intestine
3	chr13:96327000-96331000	Active TSS	K562	blood
4	chr13:96327000-96331800	Active TSS	GM12878-XiMat	blood
5	chr13:96327200-96331000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr13:96327400-96331000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr13:96327600-96330800	Active TSS	Fetal Intestine Small	intestine
8	chr13:96327600-96331000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:96327600-96331000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:96327600-96331000	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr13:96327600-96331000	Active TSS	HMEC	breast
12	chr13:96327600-96331200	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr13:96327600-96331400	Active TSS	Right Ventricle	heart
14	chr13:96327800-96331000	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr13:96328000-96330800	Active TSS	H1 Cell Line	embryonic stem cell
16	chr13:96328000-96330800	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr13:96328000-96330800	Active TSS	NHEK	skin
18	chr13:96328000-96331000	Active TSS	Colon Smooth Muscle	Colon
19	chr13:96328000-96331000	Active TSS	A549	lung
20	chr13:96328000-96331000	Active TSS	Hela-S3	cervix
21	chr13:96328000-96331000	Active TSS	HSMMtube	muscle
22	chr13:96328000-96331200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:96328000-96331200	Active TSS	Colonic Mucosa	Colon
24	chr13:96328000-96331200	Active TSS	Ovary	ovary
25	chr13:96328000-96332000	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr13:96328200-96330800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr13:96328200-96330800	Active TSS	Fetal Stomach	stomach
28	chr13:96328200-96331000	Active TSS	Brain Substantia Nigra	brain
29	chr13:96328200-96331000	Active TSS	NHLF	lung
30	chr13:96328200-96331200	Active TSS	Fetal Muscle Trunk	muscle
31	chr13:96328200-96331200	Active TSS	HSMM	muscle
32	chr13:96328200-96331400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:96328200-96331400	Active TSS	Aorta	Aorta
34	chr13:96328200-96331400	Active TSS	Left Ventricle	heart
35	chr13:96328200-96331400	Active TSS	Pancreas	Pancrea
36	chr13:96328400-96330800	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr13:96328400-96330800	Active TSS	Lung	lung
38	chr13:96328400-96330800	Active TSS	Placenta Amnion	Placenta Amnion
39	chr13:96328400-96331000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr13:96328400-96331200	Active TSS	NHDF-Ad	bronchial
41	chr13:96328600-96330800	Active TSS	Brain Angular Gyrus	brain
42	chr13:96328600-96330800	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr13:96328600-96331600	Active TSS	Rectal Smooth Muscle	rectum
44	chr13:96328800-96330800	Active TSS	Fetal Muscle Leg	muscle
45	chr13:96329000-96330800	Active TSS	Placenta	Placenta
46	chr13:96329000-96330800	Active TSS	HepG2	liver
47	chr13:96329600-96332400	Active TSS	Right Atrium	heart
48	chr13:96329800-96330800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr13:96329800-96330800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr13:96329800-96331400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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