Variant report

Variant	rs17885605
Chromosome Location	chr13:96376318-96376319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16951257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882446	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2389266	1.00[EUR][1000 genomes]
rs34303958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55649836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55858348	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58004853	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58386476	1.00[EUR][1000 genomes]
rs59863382	1.00[AMR][1000 genomes]
rs60689318	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61645359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323853	1.00[EUR][1000 genomes]
rs74106020	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106032	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106061	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74106068	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74106197	1.00[EUR][1000 genomes]
rs74106202	1.00[EUR][1000 genomes]
rs74109004	1.00[EUR][1000 genomes]
rs74109005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984248	1.00[EUR][1000 genomes]
rs7990355	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96347000-96377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:96356600-96393600	Weak transcription	Right Ventricle	heart
3	chr13:96359400-96386200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr13:96359800-96379200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr13:96360600-96379200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:96360600-96383000	Weak transcription	K562	blood
7	chr13:96360600-96384000	Weak transcription	Small Intestine	intestine
8	chr13:96361000-96380600	Weak transcription	Fetal Heart	heart
9	chr13:96361000-96393600	Weak transcription	Spleen	Spleen
10	chr13:96362400-96385800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:96362800-96393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:96363200-96380000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:96364200-96386200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr13:96364600-96384400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:96364600-96385400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:96364800-96377400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:96365400-96383800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:96365400-96383800	Weak transcription	Thymus	Thymus
19	chr13:96365600-96384600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr13:96365800-96382600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr13:96365800-96383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr13:96365800-96385200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr13:96366000-96377600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr13:96366000-96378200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr13:96366000-96382200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:96366200-96379000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr13:96366200-96380400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr13:96366200-96382400	Weak transcription	HUVEC	blood vessel
29	chr13:96366200-96384000	Weak transcription	Brain Angular Gyrus	brain
30	chr13:96366200-96384200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr13:96366200-96385200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr13:96366200-96386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr13:96366400-96376800	Weak transcription	Fetal Kidney	kidney
34	chr13:96366400-96380400	Weak transcription	Fetal Brain Male	brain
35	chr13:96366400-96382800	Weak transcription	Brain Hippocampus Middle	brain
36	chr13:96366400-96385400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr13:96366400-96415800	Weak transcription	HSMMtube	muscle
38	chr13:96367000-96376800	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr13:96367400-96379400	Weak transcription	Hela-S3	cervix
40	chr13:96367400-96382200	Weak transcription	Primary B cells from cord blood	blood
41	chr13:96367600-96381400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:96367600-96382400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr13:96367600-96386400	Weak transcription	A549	lung
44	chr13:96367600-96386400	Weak transcription	Osteobl	bone
45	chr13:96367600-96436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr13:96367800-96377400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr13:96367800-96381000	Weak transcription	HMEC	breast
48	chr13:96367800-96430200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:96369000-96379600	Weak transcription	Fetal Thymus	thymus
50	chr13:96369200-96382200	Weak transcription	Fetal Stomach	stomach

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