Variant report

Variant	rs1800479
Chromosome Location	chr2:21227383-21227384
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr2:21226920-21227566	HepG2	liver:	n/a	n/a
2	MYBL2	chr2:21226422-21234688	HepG2	liver:	n/a	n/a
3	NFIC	chr2:21226878-21227616	HepG2	liver:	n/a	n/a
4	POLR2A	chr2:21224100-21267126	HepG2	liver:	n/a	n/a
5	POLR2A	chr2:21227080-21227496	HepG2	liver:	n/a	n/a
6	MBD4	chr2:21224104-21238956	HepG2	liver:	n/a	n/a
7	POLR2A	chr2:21226457-21227645	HepG2	liver:	n/a	n/a
8	HEY1	chr2:21224107-21233145	HepG2	liver:	n/a	n/a
9	MBD4	chr2:21224090-21233169	HepG2	liver:	n/a	n/a
10	TEAD4	chr2:21224059-21239057	HepG2	liver:	n/a	n/a
11	POLR2A	chr2:21226411-21239722	HepG2	liver:	n/a	n/a
12	MYBL2	chr2:21226175-21234085	HepG2	liver:	n/a	n/a
13	POLR2A	chr2:21224116-21239694	HepG2	liver:	n/a	n/a
14	POLR2A	chr2:21224019-21267588	HepG2	liver:	n/a	n/a
15	POLR2A	chr2:21224065-21268658	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21225940..21227900-chr2:21228380..21229986,2	K562	blood:
2	chr2:21225502..21228297-chr2:21234763..21236459,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1042031	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12713450	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12720828	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs12720851	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12999441	0.91[ASN][1000 genomes]
rs13014683	0.85[EUR][1000 genomes]
rs13020417	0.83[ASN][1000 genomes]
rs17393586	0.91[ASN][1000 genomes]
rs17397826	0.91[ASN][1000 genomes]
rs35424228	0.83[ASN][1000 genomes]
rs3749054	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55664492	0.86[ASN][1000 genomes]
rs62122484	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67212568	0.86[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21222800-21234600	Weak transcription	Adipose Nuclei	Adipose
2	chr2:21223200-21245600	Strong transcription	Liver	Liver
3	chr2:21224400-21229000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:21225600-21236400	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr2:21226000-21227400	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr2:21226200-21227400	Strong transcription	Aorta	Aorta
7	chr2:21227000-21227400	Strong transcription	Left Ventricle	heart
8	chr2:21227200-21229600	Genic enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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