Variant report

Variant	rs1801702
Chromosome Location	chr2:21225485-21225486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr2:21225269-21226142	HepG2	liver:	n/a	n/a
2	MYBL2	chr2:21223967-21226141	HepG2	liver:	n/a	n/a
3	FOSL2	chr2:21225372-21226181	HepG2	liver:	n/a	n/a
4	POLR2A	chr2:21224100-21267126	HepG2	liver:	n/a	n/a
5	POLR2A	chr2:21224141-21226172	HepG2	liver:	n/a	n/a
6	MYBL2	chr2:21224101-21226174	HepG2	liver:	n/a	n/a
7	MBD4	chr2:21224104-21238956	HepG2	liver:	n/a	n/a
8	HEY1	chr2:21224107-21233145	HepG2	liver:	n/a	n/a
9	FOXA1	chr2:21225430-21226263	HepG2	liver:	n/a	n/a
10	MBD4	chr2:21224090-21233169	HepG2	liver:	n/a	n/a
11	POLR2A	chr2:21224144-21226208	HepG2	liver:	n/a	n/a
12	TEAD4	chr2:21224059-21239057	HepG2	liver:	n/a	n/a
13	POLR2A	chr2:21224116-21239694	HepG2	liver:	n/a	n/a
14	ARID3A	chr2:21224093-21225979	HepG2	liver:	n/a	n/a
15	POLR2A	chr2:21224019-21267588	HepG2	liver:	n/a	n/a
16	POLR2A	chr2:21224065-21268658	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21224463..21227068-chr2:21229153..21232894,3	K562	blood:
2	chr2:21224463..21226002-chr2:21230053..21232894,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C2orf43-7	chr2:21225293-21225747	NONHSAT069470

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10495715	0.81[AMR][1000 genomes]
rs12691188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12720817	0.85[EUR][1000 genomes]
rs12720818	0.85[EUR][1000 genomes]
rs4665645	0.81[AMR][1000 genomes]
rs497166	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55907101	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57133697	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617314	1.00[CEU][hapmap]
rs6413458	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs72654432	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21216400-21225600	Weak transcription	Aorta	Aorta
2	chr2:21220200-21225600	Weak transcription	Left Ventricle	heart
3	chr2:21222800-21234600	Weak transcription	Adipose Nuclei	Adipose
4	chr2:21223200-21245600	Strong transcription	Liver	Liver
5	chr2:21224200-21227200	Strong transcription	HepG2	liver
6	chr2:21224400-21229000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:21224800-21226000	Strong transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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