Variant report

Variant	rs1805261
Chromosome Location	chr14:32867154-32867155
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32842992..32845241-chr14:32865436..32867391,2	MCF-7	breast:
2	chr14:32854265..32856331-chr14:32866756..32868974,2	MCF-7	breast:
3	chr14:32866943..32869881-chr14:32876415..32878628,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10141597	0.83[GIH][hapmap]
rs17098967	0.83[GIH][hapmap]
rs17098983	0.85[GIH][hapmap]
rs1951182	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1951184	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1951691	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2025261	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2031106	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784181	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9888599	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv976820	chr14:32860301-32873799	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32849000-32867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:32865000-32867800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr14:32865400-32868000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:32865400-32868000	Enhancers	Brain Angular Gyrus	brain
5	chr14:32865400-32868800	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:32865400-32871400	Enhancers	Brain Anterior Caudate	brain
7	chr14:32865600-32868000	Enhancers	NHEK	skin
8	chr14:32865600-32868400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:32865600-32868800	Enhancers	Brain Hippocampus Middle	brain
10	chr14:32865600-32876400	Weak transcription	Fetal Brain Male	brain
11	chr14:32866000-32867400	Weak transcription	Psoas Muscle	Psoas
12	chr14:32866000-32869000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:32866200-32867400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:32866200-32867400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:32866200-32868000	Enhancers	Colon Smooth Muscle	Colon
16	chr14:32866200-32868200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:32866200-32869400	Enhancers	Brain Substantia Nigra	brain
18	chr14:32866400-32867400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:32866400-32869200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:32866400-32869400	Enhancers	Hela-S3	cervix
21	chr14:32866400-32876200	Weak transcription	Left Ventricle	heart
22	chr14:32866600-32867400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr14:32866600-32868000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:32866600-32868000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:32866600-32868400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:32866800-32867600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:32866800-32867600	Enhancers	Liver	Liver
28	chr14:32866800-32867800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:32866800-32867800	Enhancers	Fetal Heart	heart
30	chr14:32866800-32867800	Enhancers	Stomach Smooth Muscle	stomach
31	chr14:32866800-32868000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr14:32866800-32868400	Enhancers	HMEC	breast
33	chr14:32866800-32869200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:32866800-32871200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:32867000-32867400	Enhancers	Stomach Mucosa	stomach
36	chr14:32867000-32867600	Enhancers	Fetal Brain Female	brain
37	chr14:32867000-32867600	Enhancers	Rectal Smooth Muscle	rectum
38	chr14:32867000-32867600	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr14:32867000-32867800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr14:32867000-32867800	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr14:32867000-32867800	Enhancers	Fetal Lung	lung
42	chr14:32867000-32868000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:32867000-32868000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr14:32867000-32868000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:32867000-32868000	Enhancers	NH-A	brain
46	chr14:32867000-32868000	Enhancers	Osteobl	bone
47	chr14:32867000-32868200	Enhancers	Brain Germinal Matrix	brain
48	chr14:32867000-32868600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr14:32867000-32870800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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